LOC113014872 protein (Astatotilapia calliptera)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC113014872

Sorting nexin 10a. (229 aa)

Predicted Functional Partners:

vps35

0.944

snx15

0.880

LOC113030809

0.862

vps26a

0.862

vps26b

0.862

rps6kc1

0.845

ENSACLP00000016397

0.813

LOC113010420

0.672

WLS

0.672

usp10

0.669

Your Current Organism:

Astatotilapia calliptera

NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSACLP00000016397	LOC113010420	ENSACLP00000016397	ENSACLP00000012428	Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway.	Wnt ligand secretion mediator.	0.779
ENSACLP00000016397	LOC113014872	ENSACLP00000016397	ENSACLP00000001329	Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway.	Sorting nexin 10a.	0.813
ENSACLP00000016397	LOC113030809	ENSACLP00000016397	ENSACLP00000003941	Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway.	Uncharacterized protein.	0.977
ENSACLP00000016397	WLS	ENSACLP00000016397	ENSACLP00000039596	Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway.	Uncharacterized protein.	0.777
ENSACLP00000016397	vps26a	ENSACLP00000016397	ENSACLP00000012134	Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway.	VPS26, retromer complex component A.	0.999
ENSACLP00000016397	vps26b	ENSACLP00000016397	ENSACLP00000013537	Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway.	VPS26, retromer complex component B.	0.977
ENSACLP00000016397	vps35	ENSACLP00000016397	ENSACLP00000015525	Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway.	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	0.999
LOC113010420	ENSACLP00000016397	ENSACLP00000012428	ENSACLP00000016397	Wnt ligand secretion mediator.	Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway.	0.779
LOC113010420	LOC113014872	ENSACLP00000012428	ENSACLP00000001329	Wnt ligand secretion mediator.	Sorting nexin 10a.	0.672
LOC113010420	LOC113030809	ENSACLP00000012428	ENSACLP00000003941	Wnt ligand secretion mediator.	Uncharacterized protein.	0.681
LOC113010420	vps26a	ENSACLP00000012428	ENSACLP00000012134	Wnt ligand secretion mediator.	VPS26, retromer complex component A.	0.717
LOC113010420	vps26b	ENSACLP00000012428	ENSACLP00000013537	Wnt ligand secretion mediator.	VPS26, retromer complex component B.	0.681
LOC113010420	vps35	ENSACLP00000012428	ENSACLP00000015525	Wnt ligand secretion mediator.	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	0.820
LOC113014872	ENSACLP00000016397	ENSACLP00000001329	ENSACLP00000016397	Sorting nexin 10a.	Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway.	0.813
LOC113014872	LOC113010420	ENSACLP00000001329	ENSACLP00000012428	Sorting nexin 10a.	Wnt ligand secretion mediator.	0.672
LOC113014872	LOC113030809	ENSACLP00000001329	ENSACLP00000003941	Sorting nexin 10a.	Uncharacterized protein.	0.862
LOC113014872	WLS	ENSACLP00000001329	ENSACLP00000039596	Sorting nexin 10a.	Uncharacterized protein.	0.672
LOC113014872	rps6kc1	ENSACLP00000001329	ENSACLP00000021802	Sorting nexin 10a.	Ribosomal protein S6 kinase polypeptide 1.	0.845
LOC113014872	snx15	ENSACLP00000001329	ENSACLP00000032447	Sorting nexin 10a.	Sorting nexin 15.	0.880
LOC113014872	usp10	ENSACLP00000001329	ENSACLP00000003092	Sorting nexin 10a.	Ubiquitin carboxyl-terminal hydrolase.	0.669