STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tmod1Tropomodulin 1. (377 aa)    
Predicted Functional Partners:
ENSACLP00000029266
Nebulin.
   
 0.816
LOC113008191
Myosin, light chain 1, alkali; skeletal, fast.
   
 
 0.793
ENSACLP00000029373
Uncharacterized protein.
   
 0.721
tnnc1
Troponin C type 1b (slow).
   
 
 0.656
ENSACLP00000014047
Uncharacterized protein.
   
 
 0.615
LOC113011086
Myosin, light chain 13.
   
 
 0.615
ACTN4
Actinin alpha 4.
   
 
 0.614
actn3
Actinin alpha 3b.
   
 
 0.614
LOC113034931
Actinin, alpha 2b.
   
 
 0.614
actn1
Actinin, alpha 1.
   
 
 0.614
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.