STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
syce3Zgc:194246. (97 aa)    
Predicted Functional Partners:
syce2
Uncharacterized protein.
    
 0.868
ENSACLP00000025040
Uncharacterized protein.
    
 0.868
sycp3
Synaptonemal complex protein 3.
     
 0.658
smc3
Structural maintenance of chromosomes protein.
     
 0.634
ENSACLP00000006204
Uncharacterized protein.
      
 0.534
spata22
Uncharacterized protein.
      
 0.526
LOC113029849
REC8 meiotic recombination protein b.
     
 0.480
PRDM6
PR/SET domain 6.
    
   0.465
meiob
Methionine sulfoxide reductase B1b.
      
 0.459
hormad1-2
HORMA domain containing 1.
      
 0.448
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.