STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC113027371Potassium channel, subfamily V, member 2a; Belongs to the potassium channel family. (530 aa)    
Predicted Functional Partners:
fau
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
 0.955
ENSACLP00000041460
Ribosomal protein L31.
   
 0.855
rpl29
60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.
   
 0.850
rpl24
Ribosomal protein L24.
  
 0.848
rpl32
Ribosomal protein L32.
  
 0.845
rpl35a
Ribosomal protein L35a.
   
 0.842
rpl34
Ribosomal protein L34.
  
 0.839
LOC113008664
Ribosomal protein L36A; Belongs to the eukaryotic ribosomal protein eL42 family.
  
 0.838
rpl38
Ribosomal protein L38; Belongs to the eukaryotic ribosomal protein eL38 family.
   
 0.836
rpl21
Ribosomal protein L21.
  
 0.832
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.