STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC113027775Teashirt zinc finger homeobox 3b. (1223 aa)    
Predicted Functional Partners:
ENSACLP00000000002
LTO1 maturation factor of ABCE1.
   
   0.967
LOC113014246
Teashirt zinc finger homeobox 1.
   
   0.967
meis2
Meis homeobox 2a.
   
 0.895
LOC113006792
Meis homeobox 2b.
   
 0.895
LOC113034827
Meis homeobox 1 b.
   
 0.895
yap1
Yes-associated protein 1.
     
 0.829
LOC113021324
Homeobox B7a.
   
 
 0.690
irx3
Iroquois homeobox 3a.
    
 0.680
LOC113021320
Homeobox domain-containing protein.
    
 
 0.652
LOC113028070
Homeobox B6b.
    
 
 0.652
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.