STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSACLP00000001392Cholinergic receptor, nicotinic, gamma. (619 aa)    
Predicted Functional Partners:
LOC113034940
Cholinergic receptor, nicotinic, alpha 1 (muscle).
   
0.826
ENSACLP00000020260
Cholinergic receptor, nicotinic, alpha 4b.
    
 
0.772
CHRNA1
Cholinergic receptor nicotinic alpha 1 subunit.
   
0.740
LOC113037362
Cholinergic receptor, nicotinic, alpha 2b (neuronal).
  
 
 
0.672
ENSACLP00000023314
Uncharacterized protein.
  
 
 
0.671
LOC113006662
Cholinergic receptor, nicotinic, beta 3b (neuronal).
  
 
0.638
LOC113023675
Cholinergic receptor, nicotinic, beta polypeptide 3a.
    
0.628
LOC113025338
Cholinergic receptor, nicotinic, alpha 5.
    
0.628
ENSACLP00000014446
Si:ch211-39a7.1.
   
 
0.626
ENSACLP00000020344
Uncharacterized protein.
   
 
0.626
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.