STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC113023920STRA6-like. (644 aa)    
Predicted Functional Partners:
psmc5
Proteasome 26S subunit, ATPase 5; Belongs to the AAA ATPase family.
   
  0.673
psmc1
Proteasome 26S subunit, ATPase 1b; Belongs to the AAA ATPase family.
   
  0.673
psmb1
Proteasome subunit beta.
    
  0.652
psma4
Proteasome subunit alpha type.
    
  0.652
PSMD11
PCI domain-containing protein.
    
  0.646
LOC113028092
Proteasome 26S subunit, non-ATPase 11b.
    
  0.646
ENSACLP00000010694
Gamma-tubulin complex component; Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome; Belongs to the TUBGCP family.
    
  0.623
psma2
Proteasome subunit alpha type.
    
  0.615
mars1
Methionyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
   
  0.578
LOC113036556
Proteasome subunit alpha type.
    
  0.574
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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