trmt12 protein (Astatotilapia calliptera) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

trmt12

tRNA methyltransferase 12 homolog. (401 aa)

Predicted Functional Partners:

trmt112

0.938

ENSACLP00000033706

0.843

ENSACLP00000010086

0.840

LOC113030435

0.840

dus1l

0.831

yrdc

0.829

trit1

0.816

trmu

0.807

LOC113035844

0.786

trmt11

0.774

Your Current Organism:

Astatotilapia calliptera

NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSACLP00000010086	LOC113030435	ENSACLP00000010086	ENSACLP00000017318	Heat shock protein 4b.	Heat shock protein 4a.	0.872
ENSACLP00000010086	trmt12	ENSACLP00000010086	ENSACLP00000001413	Heat shock protein 4b.	tRNA methyltransferase 12 homolog.	0.840
ENSACLP00000033706	LOC113035844	ENSACLP00000033706	ENSACLP00000027555	tRNA-yW synthesizing protein 3 homolog (S. cerevisiae).	tRNA-yW synthesizing protein 1 homolog (S. cerevisiae).	0.896
ENSACLP00000033706	trit1	ENSACLP00000033706	ENSACLP00000007251	tRNA-yW synthesizing protein 3 homolog (S. cerevisiae).	tRNA dimethylallyltransferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37; Belongs to the IPP transferase family.	0.478
ENSACLP00000033706	trmt12	ENSACLP00000033706	ENSACLP00000001413	tRNA-yW synthesizing protein 3 homolog (S. cerevisiae).	tRNA methyltransferase 12 homolog.	0.843
LOC113030435	ENSACLP00000010086	ENSACLP00000017318	ENSACLP00000010086	Heat shock protein 4a.	Heat shock protein 4b.	0.872
LOC113030435	trmt12	ENSACLP00000017318	ENSACLP00000001413	Heat shock protein 4a.	tRNA methyltransferase 12 homolog.	0.840
LOC113035844	ENSACLP00000033706	ENSACLP00000027555	ENSACLP00000033706	tRNA-yW synthesizing protein 1 homolog (S. cerevisiae).	tRNA-yW synthesizing protein 3 homolog (S. cerevisiae).	0.896
LOC113035844	trit1	ENSACLP00000027555	ENSACLP00000007251	tRNA-yW synthesizing protein 1 homolog (S. cerevisiae).	tRNA dimethylallyltransferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37; Belongs to the IPP transferase family.	0.466
LOC113035844	trmt12	ENSACLP00000027555	ENSACLP00000001413	tRNA-yW synthesizing protein 1 homolog (S. cerevisiae).	tRNA methyltransferase 12 homolog.	0.786
dus1l	trit1	ENSACLP00000006373	ENSACLP00000007251	Dihydrouridine synthase 1-like (S. cerevisiae).	tRNA dimethylallyltransferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37; Belongs to the IPP transferase family.	0.710
dus1l	trmt11	ENSACLP00000006373	ENSACLP00000029121	Dihydrouridine synthase 1-like (S. cerevisiae).	tRNA methyltransferase 11 homolog.	0.928
dus1l	trmt12	ENSACLP00000006373	ENSACLP00000001413	Dihydrouridine synthase 1-like (S. cerevisiae).	tRNA methyltransferase 12 homolog.	0.831
dus1l	trmu	ENSACLP00000006373	ENSACLP00000007947	Dihydrouridine synthase 1-like (S. cerevisiae).	tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase.	0.723
dus1l	yrdc	ENSACLP00000006373	ENSACLP00000041257	Dihydrouridine synthase 1-like (S. cerevisiae).	YrdC N(6)-threonylcarbamoyltransferase domain containing.	0.735
trit1	ENSACLP00000033706	ENSACLP00000007251	ENSACLP00000033706	tRNA dimethylallyltransferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37; Belongs to the IPP transferase family.	tRNA-yW synthesizing protein 3 homolog (S. cerevisiae).	0.478
trit1	LOC113035844	ENSACLP00000007251	ENSACLP00000027555	tRNA dimethylallyltransferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37; Belongs to the IPP transferase family.	tRNA-yW synthesizing protein 1 homolog (S. cerevisiae).	0.466
trit1	dus1l	ENSACLP00000007251	ENSACLP00000006373	tRNA dimethylallyltransferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37; Belongs to the IPP transferase family.	Dihydrouridine synthase 1-like (S. cerevisiae).	0.710
trit1	trmt11	ENSACLP00000007251	ENSACLP00000029121	tRNA dimethylallyltransferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37; Belongs to the IPP transferase family.	tRNA methyltransferase 11 homolog.	0.659
trit1	trmt12	ENSACLP00000007251	ENSACLP00000001413	tRNA dimethylallyltransferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37; Belongs to the IPP transferase family.	tRNA methyltransferase 12 homolog.	0.816