STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pum3Pumilio RNA-binding family member 3. (647 aa)    
Predicted Functional Partners:
ebna1bp2
EBNA1 binding protein 2.
   
 
 0.997
brix1
Brix domain containing 2.
   
 
 0.997
gtpbp4
GTP binding protein 4.
   
 
 0.996
LOC113007828
Nucleolar protein interacting with the FHA domain of MKI67.
   
 
 0.992
ENSACLP00000000465
RNA helicase.
   
 
 0.987
ENSACLP00000036883
NOP58 ribonucleoprotein homolog (yeast).
   
   0.986
rbm28
RNA binding motif protein 28.
   
 
 0.986
ENSACLP00000025762
Ribosomal L1 domain containing 1.
   
 
 0.982
cebpz
CCAAT enhancer binding protein zeta.
   
 
 0.980
ENSACLP00000023026
Dyskeratosis congenita 1, dyskerin.
   
   0.980
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.