STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ltbp2Uncharacterized protein. (2080 aa)    
Predicted Functional Partners:
LOC113036502
Transforming growth factor beta; Belongs to the TGF-beta family.
   
 0.945
LOC113007307
Transforming growth factor beta; Belongs to the TGF-beta family.
    
 0.870
TGFB3
Transforming growth factor beta; Belongs to the TGF-beta family.
   
 0.868
LOC113011971
Transforming growth factor beta; Belongs to the TGF-beta family.
   
 0.867
ENSACLP00000011103
Transforming growth factor beta; Belongs to the TGF-beta family.
    
 0.864
ENSACLP00000002714
Thrombospondin 1a.
     
 0.835
LOC113006633
Thrombospondin 1b.
     
 0.834
ENSACLP00000031964
Integrin beta; Belongs to the integrin beta chain family.
    
 0.705
rbpj
Recombination signal binding protein for immunoglobulin kappa J region.
    
 0.648
ENSACLP00000017664
Recombination signal binding protein for immunoglobulin kappa J region a.
    
 0.648
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
Server load: low (36%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.