STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC113013204Si:ch211-251b21.1; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family. (461 aa)    
Predicted Functional Partners:
ENSACLP00000012724
Glutamate receptor, ionotropic, N-methyl D-aspartate 1b.
    
0.520
grin1
Glutamate receptor, ionotropic, N-methyl D-aspartate 1a.
    
0.520
gria1
Glutamate receptor, ionotropic, AMPA 1a.
  
 
0.464
LOC113030115
Uncharacterized protein.
  
 
0.464
ENSACLP00000003846
Glutamate receptor, ionotropic, N-methyl D-aspartate 2A, b.
    
 
0.449
LOC113011845
Glutamate receptor, ionotropic, N-methyl-D-aspartate 3Ba; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family.
    
 
0.449
ENSACLP00000014180
ANF_receptor domain-containing protein.
    
  0.449
grin2a
Glutamate receptor, ionotropic, N-methyl D-aspartate 2A, a.
    
 
0.449
ENSACLP00000024259
Glutamate receptor, ionotropic, N-methyl D-aspartate 2D, a.
    
 
0.449
GRIN2B
Glutamate ionotropic receptor NMDA type subunit 2B.
    
 
0.449
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.