STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC113013204Si:ch211-251b21.1; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family. (461 aa)    
Predicted Functional Partners:
nme9
NME/NM23 family member 8; Belongs to the NDK family.
    
   0.628
ak9
Adenylate kinase 9.
    
   0.620
ccdc113
DUF4201 domain-containing protein.
    
 
 0.596
cfap44
Uncharacterized protein.
    
   0.588
ENSACLP00000017156
WD repeat domain 90.
    
   0.572
efhb
EF-hand domain family, member B.
    
   0.550
ENSACLP00000011578
Cancer susceptibility candidate 1.
    
   0.550
zmynd12
Zinc finger, MYND-type containing 12.
    
   0.550
snph
Syntaphilin b.
      
 0.516
ENSACLP00000001254
NYD-SP28 domain-containing protein.
   
   0.482
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.