STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cfap44Uncharacterized protein. (1779 aa)    
Predicted Functional Partners:
erich3
Uncharacterized protein.
   
  0.860
ENSACLP00000022391
WD repeat domain 19.
   
 0.828
ENSACLP00000041154
TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
   
 0.804
taf10
Transcription initiation factor TFIID subunit 10; TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors; Belongs to the TAF10 family.
    
 0.803
LOC113030141
TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
    
 0.803
taf2
TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
    
 0.801
cdc16
Cell division cycle 16 homolog (S. cerevisiae).
   
 0.800
cpsf1
Cleavage and polyadenylation specific factor 1.
    
 0.799
taf1
Transcription initiation factor TFIID subunit.
    
 0.797
anapc4
Anaphase-promoting complex subunit 4; Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin ligase that controls progression through mitosis and the G1 phase of the cell cycle. Belongs to the APC4 family.
    
 0.795
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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