STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ppargc1aPeroxisome proliferator-activated receptor gamma, coactivator 1 alpha. (1275 aa)    
Predicted Functional Partners:
LOC113030159
Estrogen-related receptor alpha.
   
 0.990
PPARG
Peroxisome proliferator activated receptor gamma.
   
 0.983
PPARA
Peroxisome proliferator-activated receptor alpha b.
   
 0.983
ppara
Peroxisome proliferator-activated receptor alpha a.
   
 0.977
ENSACLP00000015184
BUD31 homolog.
   
 0.963
crnkl1
Crooked neck pre-mRNA splicing factor 1.
   
 0.963
sirt1
Deacetylase sirtuin-type domain-containing protein.
    
 0.962
ENSACLP00000021238
ISY1 splicing factor homolog.
   
 0.961
snw1
SNW domain containing 1.
   
 0.961
xab2
XPA binding protein 2.
   
 0.960
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.