Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSACLP00000001549ZnMc domain-containing protein. (465 aa)    
Predicted Functional Partners:
TIMP3
TIMP metallopeptidase inhibitor 3.
    
 0.712
LOC113020696
TIMP metallopeptidase inhibitor 2b.
    
 0.712
TIMP2
TIMP metallopeptidase inhibitor 2.
    
 0.712
pla2g4a
Phospholipase A2.
     
  0.676
ncf4
Neutrophil cytosolic factor 4.
   
 
 0.608
LOC113006938
Uncharacterized protein.
    
 0.599
LOC113006939
LRRCT domain-containing protein.
    
 0.599
edn1
Endothelin 1.
     
 0.591
LOC113022221
Cytochrome b-245, alpha polypeptide.
     
 0.583
ncf1
Neutrophil cytosolic factor 1.
     
  0.579
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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