Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC113010523Kruppel like factor 6. (286 aa)    
Predicted Functional Partners:
sp1
Sp1 transcription factor.
    
  0.917
LOC113015963
Kruppel like factor 7.
   
    0.744
LOC113007429
Kruppel-like factor 7b.
   
    0.744
e2f1
E2F transcription factor 1.
    
 
 0.678
LOC113026110
JunE proto-oncogene, AP-1 transcription factor subunit.
   
 0.672
ENSACLP00000018137
Jun proto-oncogene, AP-1 transcription factor subunit; Belongs to the bZIP family.
   
 0.672
LOC113015405
Exostoses (multiple) 1c; Belongs to the glycosyltransferase 47 family.
      
 0.639
LOC113008023
BRCA1 associated RING domain 1.
    
 0.627
aptx
Aprataxin.
      
 0.615
spata20
Spermatogenesis associated 20.
      
 0.613
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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