ENSACLP00000001566 protein (Astatotilapia calliptera)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSACLP00000001566

Uncharacterized protein. (326 aa)

Predicted Functional Partners:

LOC113022754

0.650

ENSACLP00000008297

0.546

LOC113022203

0.511

rptor

0.458

LOC113015524

0.443

setdb1

0.443

RPS27A

0.437

mlst8

0.434

det1

0.434

uba52

0.429

Your Current Organism:

Astatotilapia calliptera

NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSACLP00000001566	ENSACLP00000008297	ENSACLP00000001566	ENSACLP00000008297	Uncharacterized protein.	DUF4062 domain-containing protein.	0.546
ENSACLP00000001566	LOC113015524	ENSACLP00000001566	ENSACLP00000006000	Uncharacterized protein.	Uncharacterized protein.	0.443
ENSACLP00000001566	LOC113022203	ENSACLP00000001566	ENSACLP00000012502	Uncharacterized protein.	C1q domain-containing protein.	0.511
ENSACLP00000001566	LOC113022754	ENSACLP00000001566	ENSACLP00000016423	Uncharacterized protein.	Tankyrase_bdg_C domain-containing protein.	0.650
ENSACLP00000001566	RPS27A	ENSACLP00000001566	ENSACLP00000004031	Uncharacterized protein.	Ribosomal protein S27a.	0.437
ENSACLP00000001566	det1	ENSACLP00000001566	ENSACLP00000030950	Uncharacterized protein.	DET1 partner of COP1 E3 ubiquitin ligase.	0.434
ENSACLP00000001566	mlst8	ENSACLP00000001566	ENSACLP00000023854	Uncharacterized protein.	MTOR associated protein, LST8 homolog (S. cerevisiae).	0.434
ENSACLP00000001566	rptor	ENSACLP00000001566	ENSACLP00000015112	Uncharacterized protein.	Regulatory associated protein of MTOR, complex 1.	0.458
ENSACLP00000001566	setdb1	ENSACLP00000001566	ENSACLP00000030269	Uncharacterized protein.	SET domain bifurcated histone lysine methyltransferase 1b.	0.443
ENSACLP00000001566	uba52	ENSACLP00000001566	ENSACLP00000032826	Uncharacterized protein.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.429
ENSACLP00000008297	ENSACLP00000001566	ENSACLP00000008297	ENSACLP00000001566	DUF4062 domain-containing protein.	Uncharacterized protein.	0.546
ENSACLP00000008297	RPS27A	ENSACLP00000008297	ENSACLP00000004031	DUF4062 domain-containing protein.	Ribosomal protein S27a.	0.843
ENSACLP00000008297	uba52	ENSACLP00000008297	ENSACLP00000032826	DUF4062 domain-containing protein.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.995
LOC113015524	ENSACLP00000001566	ENSACLP00000006000	ENSACLP00000001566	Uncharacterized protein.	Uncharacterized protein.	0.443
LOC113015524	uba52	ENSACLP00000006000	ENSACLP00000032826	Uncharacterized protein.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.551
LOC113022203	ENSACLP00000001566	ENSACLP00000012502	ENSACLP00000001566	C1q domain-containing protein.	Uncharacterized protein.	0.511
LOC113022754	ENSACLP00000001566	ENSACLP00000016423	ENSACLP00000001566	Tankyrase_bdg_C domain-containing protein.	Uncharacterized protein.	0.650
LOC113022754	RPS27A	ENSACLP00000016423	ENSACLP00000004031	Tankyrase_bdg_C domain-containing protein.	Ribosomal protein S27a.	0.515
RPS27A	ENSACLP00000001566	ENSACLP00000004031	ENSACLP00000001566	Ribosomal protein S27a.	Uncharacterized protein.	0.437
RPS27A	ENSACLP00000008297	ENSACLP00000004031	ENSACLP00000008297	Ribosomal protein S27a.	DUF4062 domain-containing protein.	0.843