STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC113009167YY1 associated factor 2. (186 aa)    
Predicted Functional Partners:
RING1
Ring finger protein 1.
    
 0.929
ENSACLP00000033001
Ring finger protein 2.
    
 0.929
pcgf6
Polycomb group ring finger 6.
    
 0.892
pcgf1
Polycomb group ring finger 1.
    
 0.888
pcgf5
Polycomb group ring finger 5a.
    
 0.882
bmi1
Bmi1 polycomb ring finger oncogene 1a.
    
 0.869
pcgf2
Polycomb group ring finger 2.
    
 0.866
PCGF3
Polycomb group ring finger 3.
    
 0.865
l3mbtl2
L3MBTL histone methyl-lysine binding protein 2.
    
 0.814
LOC113033768
Lysine (K)-specific demethylase 2Ba.
    
 
 0.813
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
Server load: low (36%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.