STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC113009167YY1 associated factor 2. (186 aa)    
Predicted Functional Partners:
pcgf1
Polycomb group ring finger 1.
    
 0.958
pcgf5
Polycomb group ring finger 5a.
    
 0.953
pcgf6
Polycomb group ring finger 6.
    
 0.945
RING1
Ring finger protein 1.
    
 0.944
ENSACLP00000033001
Ring finger protein 2.
    
 0.944
PCGF3
Polycomb group ring finger 3.
    
 0.943
auts2
Activator of transcription and developmental regulator AUTS2 a.
    
 0.941
bmi1
Bmi1 polycomb ring finger oncogene 1a.
    
 0.926
pcgf2
Polycomb group ring finger 2.
    
 0.924
ENSACLP00000034998
Fibrosin.
    
 0.922
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.