STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC113031055Ig-like domain-containing protein. (254 aa)    
Predicted Functional Partners:
ENSACLP00000000977
Mediator of RNA polymerase II transcription subunit 7; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery.
     
  0.655
ENSACLP00000002957
Ig-like domain-containing protein.
     
  0.604
LOC113027755
Rac family small GTPase 3b.
   
  0.566
ENSACLP00000004729
Uncharacterized protein.
   
  0.566
ENSACLP00000010976
Uncharacterized protein.
   
  0.566
LOC113024639
Uncharacterized protein.
   
  0.566
RAC1
Rac family small GTPase 1.
   
  0.566
ENSACLP00000025003
Rac family small GTPase 2.
   
  0.566
LOC113020808
Uncharacterized protein.
   
  0.566
LOC113020809
Uncharacterized protein.
   
  0.566
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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