STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC113027036Ras association domain family member 7a. (443 aa)    
Predicted Functional Partners:
LOC113011389
Par-3 family cell polarity regulator alpha, b.
    
 
 0.746
PARD3
Par-3 family cell polarity regulator.
    
 
 0.746
LOC113035263
FERM domain containing 1.
    
   0.739
frmd6
FERM domain containing 6.
    
   0.739
gnptab
N-acetylglucosamine-1-phosphate transferase subunits alpha and beta.
    
   0.736
tp53bp2
Tumor protein p53 binding protein, 2a.
    
 
 0.645
ppp1r13b
Protein phosphatase 1, regulatory subunit 13Bb.
    
 
 0.645
ppp1r13l
Protein phosphatase 1, regulatory subunit 13 like.
    
 
 0.645
LOC113007712
Uncharacterized protein.
    
 
 0.600
LOC113007873
Uncharacterized protein.
    
 
 0.600
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
Server load: medium (44%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.