Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC113028239LIM domain binding 3b. (289 aa)    
Predicted Functional Partners:
pdlim7
PDZ and LIM domain 7.
   
 
0.942
LOC113025740
PDZ and LIM domain 5b.
   
 
0.936
ENSACLP00000028972
PDZ and LIM domain 5a.
   
 
0.936
suox
Sulfite oxidase.
     
  0.870
ENSACLP00000008459
Si:dkey-40c11.2.
    
  0.712
dbnl
Drebrin-like b.
    
  0.712
ENSACLP00000029781
ADF-H domain-containing protein.
    
  0.712
ENSACLP00000030263
annotation not available
    
  0.712
ENSACLP00000037366
Drebrin 1.
    
  0.712
pdlim1
PDZ and LIM domain 1 (elfin).
   
 
0.697
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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