LOC113028239 protein (Astatotilapia calliptera)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC113028239

LIM domain binding 3b. (289 aa)

Predicted Functional Partners:

ift57

0.731

ENSACLP00000009928

0.713

ENSACLP00000003423

0.702

ENSACLP00000022257

0.700

prkcz

0.694

prkci

0.694

LOC113022066

0.680

ENSACLP00000019443

0.680

LOC113013423

0.680

ENSACLP00000026146

0.677

Your Current Organism:

Astatotilapia calliptera

NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSACLP00000003423	ENSACLP00000009928	ENSACLP00000003423	ENSACLP00000009928	Intraflagellar transport 172.	TNF receptor-associated factor 3 interacting protein 1.	0.990
ENSACLP00000003423	ENSACLP00000022257	ENSACLP00000003423	ENSACLP00000022257	Intraflagellar transport 172.	Intraflagellar transport 80 homolog (Chlamydomonas).	0.994
ENSACLP00000003423	ENSACLP00000026146	ENSACLP00000003423	ENSACLP00000026146	Intraflagellar transport 172.	Intraflagellar transport 88 homolog.	0.991
ENSACLP00000003423	LOC113028239	ENSACLP00000003423	ENSACLP00000001641	Intraflagellar transport 172.	LIM domain binding 3b.	0.702
ENSACLP00000003423	ift57	ENSACLP00000003423	ENSACLP00000034862	Intraflagellar transport 172.	Intraflagellar transport 57 homolog (Chlamydomonas).	0.995
ENSACLP00000009928	ENSACLP00000003423	ENSACLP00000009928	ENSACLP00000003423	TNF receptor-associated factor 3 interacting protein 1.	Intraflagellar transport 172.	0.990
ENSACLP00000009928	ENSACLP00000022257	ENSACLP00000009928	ENSACLP00000022257	TNF receptor-associated factor 3 interacting protein 1.	Intraflagellar transport 80 homolog (Chlamydomonas).	0.995
ENSACLP00000009928	ENSACLP00000026146	ENSACLP00000009928	ENSACLP00000026146	TNF receptor-associated factor 3 interacting protein 1.	Intraflagellar transport 88 homolog.	0.994
ENSACLP00000009928	LOC113028239	ENSACLP00000009928	ENSACLP00000001641	TNF receptor-associated factor 3 interacting protein 1.	LIM domain binding 3b.	0.713
ENSACLP00000009928	ift57	ENSACLP00000009928	ENSACLP00000034862	TNF receptor-associated factor 3 interacting protein 1.	Intraflagellar transport 57 homolog (Chlamydomonas).	0.997
ENSACLP00000019443	LOC113013423	ENSACLP00000019443	ENSACLP00000032749	Uncharacterized protein.	Uncharacterized protein.	0.875
ENSACLP00000019443	LOC113022066	ENSACLP00000019443	ENSACLP00000001769	Uncharacterized protein.	Membrane associated guanylate kinase, WW and PDZ domain containing 3b.	0.875
ENSACLP00000019443	LOC113028239	ENSACLP00000019443	ENSACLP00000001641	Uncharacterized protein.	LIM domain binding 3b.	0.680
ENSACLP00000019443	prkci	ENSACLP00000019443	ENSACLP00000016615	Uncharacterized protein.	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.	0.701
ENSACLP00000019443	prkcz	ENSACLP00000019443	ENSACLP00000000953	Uncharacterized protein.	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.	0.701
ENSACLP00000022257	ENSACLP00000003423	ENSACLP00000022257	ENSACLP00000003423	Intraflagellar transport 80 homolog (Chlamydomonas).	Intraflagellar transport 172.	0.994
ENSACLP00000022257	ENSACLP00000009928	ENSACLP00000022257	ENSACLP00000009928	Intraflagellar transport 80 homolog (Chlamydomonas).	TNF receptor-associated factor 3 interacting protein 1.	0.995
ENSACLP00000022257	ENSACLP00000026146	ENSACLP00000022257	ENSACLP00000026146	Intraflagellar transport 80 homolog (Chlamydomonas).	Intraflagellar transport 88 homolog.	0.997
ENSACLP00000022257	LOC113028239	ENSACLP00000022257	ENSACLP00000001641	Intraflagellar transport 80 homolog (Chlamydomonas).	LIM domain binding 3b.	0.700
ENSACLP00000022257	ift57	ENSACLP00000022257	ENSACLP00000034862	Intraflagellar transport 80 homolog (Chlamydomonas).	Intraflagellar transport 57 homolog (Chlamydomonas).	0.997