STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pdzrn4PDZ domain containing ring finger 4. (813 aa)    
Predicted Functional Partners:
ENSACLP00000018312
Baculoviral IAP repeat containing 6.
   
 0.900
mib2
Mindbomb E3 ubiquitin protein ligase 2.
    
 0.900
RPS27A
Ribosomal protein S27a.
    
 0.849
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
  0.823
ENSACLP00000037094
Im:7152348.
    
 0.797
ripk4
Receptor-interacting serine-threonine kinase 4.
    
 0.777
tradd
Tnfrsf1a-associated via death domain.
    
 0.760
zfand4
Zinc finger, AN1-type domain 4.
    
 0.741
tab2
TGF-beta activated kinase 1 (MAP3K7) binding protein 2.
    
 0.735
tab3
TGF-beta activated kinase 1 (MAP3K7) binding protein 3.
    
 0.735
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.