hoxa3 protein (Astatotilapia calliptera) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

hoxa3

Homeobox A4a. (419 aa)

Predicted Functional Partners:

ENSACLP00000031412

0.736

hoxa5

0.730

HOXA7

0.730

LOC113025855

0.724

ENSACLP00000030469

0.724

pax9

0.719

LOC113021323

0.625

LOC113015590

0.623

LOC113009904

0.621

LOC113031962

0.619

Your Current Organism:

Astatotilapia calliptera

NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSACLP00000030469	hoxa3	ENSACLP00000030469	ENSACLP00000001668	Actin related protein 2/3 complex, subunit 3.	Homeobox A4a.	0.724
ENSACLP00000031412	hoxa3	ENSACLP00000031412	ENSACLP00000001668	Forkhead box N1.	Homeobox A4a.	0.736
ENSACLP00000031412	pax9	ENSACLP00000031412	ENSACLP00000011581	Forkhead box N1.	Paired box 9.	0.660
HOXA7	LOC113009904	ENSACLP00000001770	ENSACLP00000033925	Homeobox A7.	Pre-B-cell leukemia homeobox 1a.	0.544
HOXA7	LOC113015590	ENSACLP00000001770	ENSACLP00000039758	Homeobox A7.	Homeobox domain-containing protein.	0.544
HOXA7	LOC113021323	ENSACLP00000001770	ENSACLP00000005160	Homeobox A7.	Homeobox B4a.	0.803
HOXA7	LOC113031962	ENSACLP00000001770	ENSACLP00000013011	Homeobox A7.	Pre-B-cell leukemia homeobox 2.	0.544
HOXA7	hoxa3	ENSACLP00000001770	ENSACLP00000001668	Homeobox A7.	Homeobox A4a.	0.730
LOC113009904	HOXA7	ENSACLP00000033925	ENSACLP00000001770	Pre-B-cell leukemia homeobox 1a.	Homeobox A7.	0.544
LOC113009904	LOC113021323	ENSACLP00000033925	ENSACLP00000005160	Pre-B-cell leukemia homeobox 1a.	Homeobox B4a.	0.425
LOC113009904	hoxa3	ENSACLP00000033925	ENSACLP00000001668	Pre-B-cell leukemia homeobox 1a.	Homeobox A4a.	0.621
LOC113009904	hoxa5	ENSACLP00000033925	ENSACLP00000001679	Pre-B-cell leukemia homeobox 1a.	Homeobox A5a.	0.453
LOC113015590	HOXA7	ENSACLP00000039758	ENSACLP00000001770	Homeobox domain-containing protein.	Homeobox A7.	0.544
LOC113015590	LOC113021323	ENSACLP00000039758	ENSACLP00000005160	Homeobox domain-containing protein.	Homeobox B4a.	0.425
LOC113015590	hoxa3	ENSACLP00000039758	ENSACLP00000001668	Homeobox domain-containing protein.	Homeobox A4a.	0.623
LOC113015590	hoxa5	ENSACLP00000039758	ENSACLP00000001679	Homeobox domain-containing protein.	Homeobox A5a.	0.453
LOC113021323	HOXA7	ENSACLP00000005160	ENSACLP00000001770	Homeobox B4a.	Homeobox A7.	0.803
LOC113021323	LOC113009904	ENSACLP00000005160	ENSACLP00000033925	Homeobox B4a.	Pre-B-cell leukemia homeobox 1a.	0.425
LOC113021323	LOC113015590	ENSACLP00000005160	ENSACLP00000039758	Homeobox B4a.	Homeobox domain-containing protein.	0.425
LOC113021323	LOC113031962	ENSACLP00000005160	ENSACLP00000013011	Homeobox B4a.	Pre-B-cell leukemia homeobox 2.	0.446