STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
usp47Ubiquitin specific peptidase 47; Belongs to the peptidase C19 family. (1383 aa)    
Predicted Functional Partners:
polb
DNA polymerase; DNA polymerase that functions in several pathways of DNA repair. Involved in base excision repair (BER) responsible for repair of lesions that give rise to abasic (AP) sites in DNA. Also contributes to DNA double-strand break repair by non-homologous end joining and homologous recombination. Has both template-dependent and template- independent (terminal transferase) DNA polymerase activities. Has also a 5'-deoxyribose-5-phosphate lyase (dRP lyase) activity.
    
 0.968
LOC113036715
F-box and WD repeat domain containing 11b.
    
 
 0.931
traf6
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
    
 
 0.824
zranb1
Zinc finger, RAN-binding domain containing 1a.
    
 
 0.756
ZRANB1
Zinc finger RANBP2-type containing 1.
    
 
 0.756
ENSACLP00000009605
Ubiquitin B.
    
 
 0.737
LOC113030103
Uncharacterized protein.
    
 
 0.737
ENSACLP00000023909
BZIP domain-containing protein.
    
   0.730
cebpa
CCAAT/enhancer-binding protein.
    
   0.730
EFL1
Elongation factor like GTPase 1.
   
 
  0.701
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.