Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
NHLRC3NHL repeat containing 3. (363 aa)    
Predicted Functional Partners:
proser1
Proline and serine rich 1.
    
 
 0.847
LHFPL6
LHFPL tetraspan subfamily member 6.
      
 0.654
LOC113034374
AT rich interactive domain 5A (MRF1-like).
    
 
 0.542
LOC113027580
Docking protein 4.
      
 0.541
ENSACLP00000035254
Docking protein 6.
      
 0.541
LOC113035766
FRAS1 related extracellular matrix 2b.
    
 0.530
frem3
Fras1 related extracellular matrix 3.
    
 0.530
ndfip2
Nedd4 family interacting protein 2.
      
 0.530
ENSACLP00000004090
Immunoglobin superfamily, member 21a.
    
 
 0.511
ENSACLP00000005047
Immunoglobin superfamily, member 21b.
    
 
 0.511
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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