Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC113036866RNA binding motif protein 7. (265 aa)    
Predicted Functional Partners:
mtrex
Mtr4 exosome RNA helicase.
    
 0.999
zcchc8
Zinc finger, CCHC domain containing 8.
   
 0.999
exosc8
Exosome component 8.
    
 0.996
exosc3
Exosome component 3.
    
 0.995
exosc2
Exosome component 2.
    
 0.994
ENSACLP00000038847
C1D nuclear receptor corepressor.
   
 0.994
sf3b2
Splicing factor 3b, subunit 2.
    
 0.993
exosc1
Exosome component 1.
    
 0.993
exosc10
Exosome component 10.
    
 0.993
exosc7
Exosome component 7.
    
 0.991
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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