STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC113036866RNA binding motif protein 7. (265 aa)    
Predicted Functional Partners:
zcchc8
Zinc finger, CCHC domain containing 8.
    
 
 0.977
mtrex
Mtr4 exosome RNA helicase.
    
 0.972
exosc8
Exosome component 8.
    
 
 0.923
exosc3
Exosome component 3.
    
 
 0.901
sf3b2
Splicing factor 3b, subunit 2.
    
 0.898
exosc7
Exosome component 7.
    
 
 0.846
exosc2
Exosome component 2.
    
 
 0.810
ENSACLP00000038847
C1D nuclear receptor corepressor.
   
 
 0.799
exosc5
Exosome component 5.
    
 
 0.788
exosc10
Exosome component 10.
    
 
 0.787
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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