STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ppp1ccSerine/threonine-protein phosphatase; Belongs to the PPP phosphatase family. (323 aa)    
Predicted Functional Partners:
cpsf1
Cleavage and polyadenylation specific factor 1.
    
 0.961
rb1
Retinoblastoma 1.
   
 0.958
WDR33
WD repeat domain 33.
   
 0.958
eif2s1
Eukaryotic translation initiation factor 2, subunit 1 alpha b.
   
 0.957
ENSACLP00000021479
WD repeat domain 82.
    
 0.952
cpsf4
Cleavage and polyadenylation specific factor 4.
    
 0.945
ssu72
SSU72 homolog, RNA polymerase II CTD phosphatase.
   
 0.944
ppp1r12c
Protein phosphatase 1, regulatory subunit 12C.
  
 0.942
LOC113024099
FIP1 like 1b (S. cerevisiae).
    
 0.942
LOC113026684
Protein phosphatase 1 regulatory subunit.
  
 0.942
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.