Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ppp1ccSerine/threonine-protein phosphatase; Belongs to the PPP phosphatase family. (323 aa)    
Predicted Functional Partners:
cpsf1
Cleavage and polyadenylation specific factor 1.
    
 0.976
WDR33
WD repeat domain 33.
   
 0.976
rb1
Retinoblastoma 1.
   
 0.975
eif2s1
Eukaryotic translation initiation factor 2, subunit 1 alpha b.
   
 0.968
cpsf4
Cleavage and polyadenylation specific factor 4.
    
 0.967
LOC113012140
Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.
   
 0.967
LOC113017236
Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.
   
 0.967
ENSACLP00000037389
Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.
   
 0.967
LOC113024099
FIP1 like 1b (S. cerevisiae).
    
 0.964
ENSACLP00000021479
WD repeat domain 82.
   
 0.962
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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