STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC113027813Uncharacterized protein. (677 aa)    
Predicted Functional Partners:
rbp4
Retinol binding protein 4, plasma; Belongs to the calycin superfamily. Lipocalin family.
     
 0.817
LOC113010859
Retinol binding protein 1, cellular, tandem duplicate 1; Belongs to the calycin superfamily. Fatty-acid binding protein (FABP) family.
     
 0.794
mars1
Methionyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
   
  0.578
traf7
TNF receptor-associated factor 7.
    
  0.568
ENSACLP00000018312
Baculoviral IAP repeat containing 6.
   
  0.567
ENSACLP00000024264
Enoyl-CoA delta isomerase 2.
    
  0.538
gak
Cyclin G associated kinase.
   
  0.536
pla2g4a
Phospholipase A2.
    
  0.530
calm1
Calmodulin 2a (phosphorylase kinase, delta); Belongs to the calmodulin family.
    
 0.528
calm1-2
Calmodulin 3a (phosphorylase kinase, delta); Belongs to the calmodulin family.
    
 0.528
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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