Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
zfpm1Zinc finger protein, FOG family member 1. (1308 aa)    
Predicted Functional Partners:
LOC113022894
GATA binding protein 1a.
   
 0.999
gata3
GATA binding protein 3.
    
 0.922
LOC113022847
GATA binding protein 2a.
    
 0.922
GATA2
GATA binding protein 2.
    
 0.922
gata4
GATA binding protein 4.
   
 0.842
gata5
GATA binding protein 5.
   
 0.840
gata6
GATA binding protein 6.
   
 0.840
LOC113027513
Retinoblastoma binding protein 4, like.
    
 0.801
LOC113011815
Retinoblastoma binding protein 4.
    
 0.801
LOC113014472
WD_REPEATS_REGION domain-containing protein.
    
 0.801
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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