STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC113011147TRIF-NTD domain-containing protein. (550 aa)    
Predicted Functional Partners:
traf6
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
   
 0.980
tmed2
Transmembrane p24 trafficking protein 2.
   
 0.972
LOC113019278
Interferon regulatory factor 3.
    
 0.970
tmed10
Transmembrane p24 trafficking protein 10.
   
 0.960
LOC113024405
Toll-like receptor 3; Belongs to the Toll-like receptor family.
   
 0.920
ripk1
Receptor (TNFRSF)-interacting serine-threonine kinase 1, like.
   
 0.918
irf7
Interferon regulatory factor 7.
    
 0.914
LOC113013039
Transmembrane p24 trafficking protein 4.
   
 0.913
tmed9
Transmembrane p24 trafficking protein 9.
   
 0.913
irak4
Interleukin-1 receptor-associated kinase 4.
   
 0.908
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.