Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
atf1Activating transcription factor 1. (311 aa)    
Predicted Functional Partners:
ENSACLP00000036881
CREB binding protein a.
    
 0.952
LOC113020749
CREB binding protein b.
    
 0.952
LOC113021131
E1A binding protein p300 b.
    
 0.949
LOC113027597
E1A binding protein p300 a.
    
 0.949
atf4
Activating transcription factor 4a.
    
 0.941
LOC113021099
Activating transcription factor 4b.
    
 0.940
creb3l1
BZIP domain-containing protein.
    
 0.922
camk4
Si:ch73-60h1.1; Belongs to the protein kinase superfamily.
    
 0.914
ppargc1a
Peroxisome proliferator-activated receptor gamma, coactivator 1 alpha.
    
 0.900
ENSACLP00000012123
Ribosomal protein S6 kinase.
   
 0.896
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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