LOC113023919 protein (Astatotilapia calliptera)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

LOC113023919

ATP-binding cassette, sub-family A (ABC1), member 1A. (2271 aa)

Predicted Functional Partners:

LOC113032020

0.910

LOC113032148

0.910

nr1h3

0.875

trip12

0.864

ENSACLP00000035790

0.857

ENSACLP00000003577

0.856

ENSACLP00000016344

0.812

ENSACLP00000040985

0.804

LOC113022989

0.759

LOC113033004

0.728

Your Current Organism:

Astatotilapia calliptera

NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSACLP00000003577	ENSACLP00000016344	ENSACLP00000003577	ENSACLP00000016344	Uncharacterized protein.	Uncharacterized protein.	0.774
ENSACLP00000003577	ENSACLP00000035790	ENSACLP00000003577	ENSACLP00000035790	Uncharacterized protein.	Zgc:172302.	0.872
ENSACLP00000003577	ENSACLP00000040985	ENSACLP00000003577	ENSACLP00000040985	Uncharacterized protein.	ATP-binding cassette, sub-family A (ABC1), member 3b.	0.782
ENSACLP00000003577	LOC113022989	ENSACLP00000003577	ENSACLP00000036531	Uncharacterized protein.	Cell division cycle 42.	0.485
ENSACLP00000003577	LOC113023919	ENSACLP00000003577	ENSACLP00000001786	Uncharacterized protein.	ATP-binding cassette, sub-family A (ABC1), member 1A.	0.856
ENSACLP00000003577	LOC113032020	ENSACLP00000003577	ENSACLP00000041061	Uncharacterized protein.	Uncharacterized protein.	0.860
ENSACLP00000003577	LOC113032148	ENSACLP00000003577	ENSACLP00000041063	Uncharacterized protein.	Uncharacterized protein.	0.860
ENSACLP00000003577	LOC113033004	ENSACLP00000003577	ENSACLP00000008942	Uncharacterized protein.	Rho related BTB domain containing 4.	0.871
ENSACLP00000003577	nr1h3	ENSACLP00000003577	ENSACLP00000017823	Uncharacterized protein.	Nuclear receptor subfamily 1, group H, member 3.	0.832
ENSACLP00000003577	trip12	ENSACLP00000003577	ENSACLP00000009580	Uncharacterized protein.	Thyroid hormone receptor interactor 12.	0.864
ENSACLP00000016344	ENSACLP00000003577	ENSACLP00000016344	ENSACLP00000003577	Uncharacterized protein.	Uncharacterized protein.	0.774
ENSACLP00000016344	ENSACLP00000035790	ENSACLP00000016344	ENSACLP00000035790	Uncharacterized protein.	Zgc:172302.	0.812
ENSACLP00000016344	ENSACLP00000040985	ENSACLP00000016344	ENSACLP00000040985	Uncharacterized protein.	ATP-binding cassette, sub-family A (ABC1), member 3b.	0.666
ENSACLP00000016344	LOC113023919	ENSACLP00000016344	ENSACLP00000001786	Uncharacterized protein.	ATP-binding cassette, sub-family A (ABC1), member 1A.	0.812
ENSACLP00000016344	LOC113032020	ENSACLP00000016344	ENSACLP00000041061	Uncharacterized protein.	Uncharacterized protein.	0.721
ENSACLP00000016344	LOC113032148	ENSACLP00000016344	ENSACLP00000041063	Uncharacterized protein.	Uncharacterized protein.	0.635
ENSACLP00000035790	ENSACLP00000003577	ENSACLP00000035790	ENSACLP00000003577	Zgc:172302.	Uncharacterized protein.	0.872
ENSACLP00000035790	ENSACLP00000016344	ENSACLP00000035790	ENSACLP00000016344	Zgc:172302.	Uncharacterized protein.	0.812
ENSACLP00000035790	ENSACLP00000040985	ENSACLP00000035790	ENSACLP00000040985	Zgc:172302.	ATP-binding cassette, sub-family A (ABC1), member 3b.	0.804
ENSACLP00000035790	LOC113022989	ENSACLP00000035790	ENSACLP00000036531	Zgc:172302.	Cell division cycle 42.	0.667