STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC113031045-2Uncharacterized LOC113031045. (346 aa)    
Predicted Functional Partners:
eri1
Exoribonuclease 1.
   
 
 0.878
NCBP1
Nuclear cap binding protein subunit 1.
   
 0.801
LOC113017433
MIF4G domain-containing protein.
    
 
 0.797
mif4gd
MIF4G domain containing.
    
 
 0.797
ctif
CBP80/20-dependent translation initiation factor.
    
 
 0.789
LSM10
LSM10, U7 small nuclear RNA associated.
   
 
 0.774
lsm11
LSM11, U7 small nuclear RNA associated.
     
 0.764
ENSACLP00000025572
Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.
   
 
 0.729
eri2
ERI1 exoribonuclease family member 2.
   
 
 0.718
LOC113007418
RAN binding protein 2.
   
 
  0.691
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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