STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VSX2Visual system homeobox 2. (395 aa)    
Predicted Functional Partners:
LOC113036033
Growth associated protein 43.
      
 0.689
tenm2
Teneurin transmembrane protein 2.
      
 0.686
hnf4a
Hepatocyte nuclear factor 4, alpha.
      
 0.562
pou4f2
POU domain protein.
   
  
 0.556
atoh7
Atonal bHLH transcription factor 7.
   
  
 0.555
ENSACLP00000033648
POU domain protein.
   
  
 0.481
ENSACLP00000000401
Forkhead box N4.
      
 0.408
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.