Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VSX2Visual system homeobox 2. (395 aa)    
Predicted Functional Partners:
pou4f2
POU domain protein.
   
  
 0.757
tenm2
Teneurin transmembrane protein 2.
      
 0.741
LOC113036033
Growth associated protein 43.
      
 0.741
atoh7
Atonal bHLH transcription factor 7.
      
 0.720
ENSACLP00000033648
POU domain protein.
   
  
 0.702
hnf4a
Hepatocyte nuclear factor 4, alpha.
      
 0.683
ENSACLP00000000401
Forkhead box N4.
      
 0.654
wdr20
WD repeat domain 20a.
    
   0.633
DMWD
DM1 locus, WD repeat containing.
    
   0.633
usp46
Ubiquitin specific peptidase 46; Belongs to the peptidase C19 family.
    
   0.611
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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