STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cntn1Contactin 1b. (1042 aa)    
Predicted Functional Partners:
nfasc
Neurofascin homolog (chicken) a.
    
0.926
nrcam
Neuronal cell adhesion molecule a.
    
0.914
NRCAM
Neuronal cell adhesion molecule.
    
0.907
cntnap1
Contactin associated protein 1.
   
 0.897
CNTN1
Contactin 1.
  
  
 
0.830
LOC113022260
Carbonic anhydrase XVI b.
    
 0.775
ENSACLP00000039895
Alpha-carbonic anhydrase domain-containing protein.
    
 0.760
ENSACLP00000006840
L1 cell adhesion molecule, paralog a.
    
0.732
ENSACLP00000014954
Uncharacterized protein.
    
0.732
ENSACLP00000017398
Uncharacterized protein.
    
0.732
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.