STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSACLP00000001873Uncharacterized protein. (151 aa)    
Predicted Functional Partners:
ENSACLP00000002032
GRAM domain containing 1Bb.
 
      0.817
ENSACLP00000017166
GRAM domain containing 1A.
 
  
   0.698
scn2b
Sodium channel, voltage-gated, type II, beta.
    
 0.635
mpzl2
Myelin protein zero like 2.
    
 0.635
LOC113030408
Myelin protein zero-like 2b.
    
 0.635
ENSACLP00000039748
GRAM domain containing 1c.
 
  
   0.620
scn4b
Sodium channel, voltage-gated, type IV, beta a.
    
 0.572
LOC113031102
Sodium channel, voltage-gated, type IV, beta b.
    
 0.572
GRAMD2B
GRAM domain containing 2B.
    
   0.475
LOC113025446
GRAM domain-containing protein.
    
   0.475
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.