Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSACLP00000001877Fraser extracellular matrix complex subunit 1. (4015 aa)    
Predicted Functional Partners:
LOC113035766
FRAS1 related extracellular matrix 2b.
   
 0.924
frem3
Fras1 related extracellular matrix 3.
   
 0.921
npnt
Nephronectin a.
   
 0.914
frem1
Fras1 related extracellular matrix 1a.
    
 0.908
ENSACLP00000030575
Fras1 related extracellular matrix 1b.
    
 0.908
LOC113023032
Uncharacterized protein.
      
 0.895
frem2
FRAS1 related extracellular matrix 2a.
   
 0.894
itga8
Integrin, alpha 8; Belongs to the integrin alpha chain family.
   
 
 0.888
LOC113010138
Integrin beta; Belongs to the integrin beta chain family.
    
  0.882
itgb1
Integrin beta; Belongs to the integrin beta chain family.
    
  0.882
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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