STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSACLP00000001877Fraser extracellular matrix complex subunit 1. (4015 aa)    
Predicted Functional Partners:
frem1
Fras1 related extracellular matrix 1a.
   
0.928
ENSACLP00000030575
Fras1 related extracellular matrix 1b.
   
0.928
LOC113035766
FRAS1 related extracellular matrix 2b.
   
0.915
frem3
Fras1 related extracellular matrix 3.
   
0.915
npnt
Nephronectin a.
   
 0.896
itga8
Integrin, alpha 8; Belongs to the integrin alpha chain family.
   
 
 0.865
frem2
FRAS1 related extracellular matrix 2a.
   
0.861
LOC113010138
Integrin beta; Belongs to the integrin beta chain family.
    
  0.860
itgb1
Integrin beta; Belongs to the integrin beta chain family.
    
  0.860
ENSACLP00000005037
Solute carrier family 8 member 1a; Belongs to the Ca(2+):cation antiporter (CaCA) (TC 2.A.19) family.
   
0.854
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.