STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC113032490Uncharacterized protein. (356 aa)    
Predicted Functional Partners:
LOC113031860
Paraoxonase 2.
  
0.878
ENSACLP00000041064
Apolipoprotein Eb.
   
  
 0.564
cetp
Cholesteryl ester transfer protein; Involved in the transfer of neutral lipids, including cholesteryl ester and triglyceride, among lipoprotein particles. Allows the net movement of cholesteryl ester from high density lipoproteins/HDL to triglyceride-rich very low density lipoproteins/VLDL, and the equimolar transport of triglyceride from VLDL to HDL; Belongs to the BPI/LBP/Plunc superfamily. BPI/LBP family.
      
 0.533
ENSACLP00000030483
Lecithin-cholesterol acyltransferase.
   
  
 0.521
LOC113032020
Uncharacterized protein.
   
  
 0.502
LOC113032148
Uncharacterized protein.
   
  
 0.502
nfyc
Nuclear transcription factor Y, gamma.
    
   0.485
LOC113021565
Microseminoprotein, beta-like.
   
  
 0.449
ttc25
Tetratricopeptide repeat domain 25.
      
 0.432
LOC113014966
Apolipoprotein Ea.
   
  
 0.426
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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