LOC113030706 protein (Astatotilapia calliptera)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC113030706

Uncharacterized protein. (642 aa)

Predicted Functional Partners:

LOC113033441

0.578

ENSACLP00000011022

0.578

LOC113010606

0.578

LOC113009053

0.578

ENSACLP00000034020

0.578

pik3r1

0.578

LOC113016116

0.543

SHC3

0.543

SHC4

0.543

shc1

0.543

Your Current Organism:

Astatotilapia calliptera

NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSACLP00000011022	ENSACLP00000034020	ENSACLP00000011022	ENSACLP00000034020	Phosphoinositide-3-kinase, regulatory subunit 2 (beta).	Uncharacterized protein.	0.816
ENSACLP00000011022	LOC113010606	ENSACLP00000011022	ENSACLP00000018537	Phosphoinositide-3-kinase, regulatory subunit 2 (beta).	Phosphoinositide-3-kinase, regulatory subunit 3a (gamma).	0.818
ENSACLP00000011022	LOC113016116	ENSACLP00000011022	ENSACLP00000000682	Phosphoinositide-3-kinase, regulatory subunit 2 (beta).	SHC (Src homology 2 domain containing) transforming protein 2.	0.570
ENSACLP00000011022	LOC113030706	ENSACLP00000011022	ENSACLP00000001887	Phosphoinositide-3-kinase, regulatory subunit 2 (beta).	Uncharacterized protein.	0.578
ENSACLP00000011022	LOC113033441	ENSACLP00000011022	ENSACLP00000009076	Phosphoinositide-3-kinase, regulatory subunit 2 (beta).	Uncharacterized protein.	0.818
ENSACLP00000011022	SHC3	ENSACLP00000011022	ENSACLP00000009889	Phosphoinositide-3-kinase, regulatory subunit 2 (beta).	SHC adaptor protein 3.	0.675
ENSACLP00000011022	SHC4	ENSACLP00000011022	ENSACLP00000025078	Phosphoinositide-3-kinase, regulatory subunit 2 (beta).	SHC adaptor protein 4.	0.675
ENSACLP00000011022	shc1	ENSACLP00000011022	ENSACLP00000027718	Phosphoinositide-3-kinase, regulatory subunit 2 (beta).	SHC (Src homology 2 domain containing) transforming protein 1.	0.675
ENSACLP00000034020	ENSACLP00000011022	ENSACLP00000034020	ENSACLP00000011022	Uncharacterized protein.	Phosphoinositide-3-kinase, regulatory subunit 2 (beta).	0.816
ENSACLP00000034020	LOC113009053	ENSACLP00000034020	ENSACLP00000032720	Uncharacterized protein.	Phosphoinositide-3-kinase, regulatory subunit 3b (gamma).	0.815
ENSACLP00000034020	LOC113010606	ENSACLP00000034020	ENSACLP00000018537	Uncharacterized protein.	Phosphoinositide-3-kinase, regulatory subunit 3a (gamma).	0.851
ENSACLP00000034020	LOC113016116	ENSACLP00000034020	ENSACLP00000000682	Uncharacterized protein.	SHC (Src homology 2 domain containing) transforming protein 2.	0.570
ENSACLP00000034020	LOC113030706	ENSACLP00000034020	ENSACLP00000001887	Uncharacterized protein.	Uncharacterized protein.	0.578
ENSACLP00000034020	LOC113033441	ENSACLP00000034020	ENSACLP00000009076	Uncharacterized protein.	Uncharacterized protein.	0.849
ENSACLP00000034020	SHC3	ENSACLP00000034020	ENSACLP00000009889	Uncharacterized protein.	SHC adaptor protein 3.	0.645
ENSACLP00000034020	SHC4	ENSACLP00000034020	ENSACLP00000025078	Uncharacterized protein.	SHC adaptor protein 4.	0.645
ENSACLP00000034020	pik3r1	ENSACLP00000034020	ENSACLP00000039574	Uncharacterized protein.	Phosphoinositide-3-kinase, regulatory subunit 1 (alpha).	0.816
ENSACLP00000034020	shc1	ENSACLP00000034020	ENSACLP00000027718	Uncharacterized protein.	SHC (Src homology 2 domain containing) transforming protein 1.	0.645
LOC113009053	ENSACLP00000034020	ENSACLP00000032720	ENSACLP00000034020	Phosphoinositide-3-kinase, regulatory subunit 3b (gamma).	Uncharacterized protein.	0.815
LOC113009053	LOC113010606	ENSACLP00000032720	ENSACLP00000018537	Phosphoinositide-3-kinase, regulatory subunit 3b (gamma).	Phosphoinositide-3-kinase, regulatory subunit 3a (gamma).	0.815