LOC113013056 protein (Astatotilapia calliptera)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC113013056

Ataxin 7-like 2b. (591 aa)

Predicted Functional Partners:

LOC113030141

0.959

taf10

0.957

tada3

0.953

ENSACLP00000041154

0.944

eny2

0.943

supt3h

0.933

ENSACLP00000021146

0.924

ENSACLP00000004344

0.923

LOC113027648

0.913

LOC113020721

0.913

Your Current Organism:

Astatotilapia calliptera

NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSACLP00000004344	ENSACLP00000021146	ENSACLP00000004344	ENSACLP00000021146	SPT20 homolog, SAGA complex component.	TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.925
ENSACLP00000004344	ENSACLP00000041154	ENSACLP00000004344	ENSACLP00000041154	SPT20 homolog, SAGA complex component.	TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.998
ENSACLP00000004344	LOC113013056	ENSACLP00000004344	ENSACLP00000001934	SPT20 homolog, SAGA complex component.	Ataxin 7-like 2b.	0.923
ENSACLP00000004344	LOC113020721	ENSACLP00000004344	ENSACLP00000038242	SPT20 homolog, SAGA complex component.	Ubiquitin carboxyl-terminal hydrolase.	0.947
ENSACLP00000004344	LOC113027648	ENSACLP00000004344	ENSACLP00000031283	SPT20 homolog, SAGA complex component.	Ubiquitin carboxyl-terminal hydrolase.	0.947
ENSACLP00000004344	LOC113030141	ENSACLP00000004344	ENSACLP00000039232	SPT20 homolog, SAGA complex component.	TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.987
ENSACLP00000004344	eny2	ENSACLP00000004344	ENSACLP00000035417	SPT20 homolog, SAGA complex component.	Transcription and mRNA export factor ENY2; Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. The transcription regulatory histone acetylation (HAT) complex SAGA is a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex that specifically deubiquitinates histones. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription. The TREX-2 complex [...]	0.985
ENSACLP00000004344	supt3h	ENSACLP00000004344	ENSACLP00000040278	SPT20 homolog, SAGA complex component.	SPT3 homolog, SAGA and STAGA complex component.	0.992
ENSACLP00000004344	tada3	ENSACLP00000004344	ENSACLP00000028658	SPT20 homolog, SAGA complex component.	Transcriptional adaptor 3 (NGG1 homolog, yeast)-like.	0.987
ENSACLP00000004344	taf10	ENSACLP00000004344	ENSACLP00000033377	SPT20 homolog, SAGA complex component.	Transcription initiation factor TFIID subunit 10; TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors; Belongs to the TAF10 family.	0.990
ENSACLP00000021146	ENSACLP00000004344	ENSACLP00000021146	ENSACLP00000004344	TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	SPT20 homolog, SAGA complex component.	0.925
ENSACLP00000021146	ENSACLP00000041154	ENSACLP00000021146	ENSACLP00000041154	TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.999
ENSACLP00000021146	LOC113013056	ENSACLP00000021146	ENSACLP00000001934	TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	Ataxin 7-like 2b.	0.924
ENSACLP00000021146	LOC113020721	ENSACLP00000021146	ENSACLP00000038242	TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	Ubiquitin carboxyl-terminal hydrolase.	0.943
ENSACLP00000021146	LOC113027648	ENSACLP00000021146	ENSACLP00000031283	TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	Ubiquitin carboxyl-terminal hydrolase.	0.943
ENSACLP00000021146	LOC113030141	ENSACLP00000021146	ENSACLP00000039232	TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.999
ENSACLP00000021146	eny2	ENSACLP00000021146	ENSACLP00000035417	TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	Transcription and mRNA export factor ENY2; Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. The transcription regulatory histone acetylation (HAT) complex SAGA is a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex that specifically deubiquitinates histones. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription. The TREX-2 complex [...]	0.982
ENSACLP00000021146	supt3h	ENSACLP00000021146	ENSACLP00000040278	TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	SPT3 homolog, SAGA and STAGA complex component.	0.991
ENSACLP00000021146	tada3	ENSACLP00000021146	ENSACLP00000028658	TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	Transcriptional adaptor 3 (NGG1 homolog, yeast)-like.	0.997
ENSACLP00000021146	taf10	ENSACLP00000021146	ENSACLP00000033377	TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	Transcription initiation factor TFIID subunit 10; TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors; Belongs to the TAF10 family.	0.999