cd34 protein (Astatotilapia calliptera) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

cd34

Si:ch211-286o17.1. (341 aa)

Predicted Functional Partners:

LOC113015921

0.895

ENSACLP00000037026

0.895

ENSACLP00000037114

0.895

ENSACLP00000037295

0.895

LOC113013605

0.872

ENSACLP00000030532

0.783

ENSACLP00000018204

0.769

cdh5

0.728

ENSACLP00000037142

0.727

cd79a

0.723

Your Current Organism:

Astatotilapia calliptera

NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSACLP00000018204	ENSACLP00000030532	ENSACLP00000018204	ENSACLP00000030532	Protein tyrosine phosphatase receptor type C.	Kit ligand a.	0.616
ENSACLP00000018204	ENSACLP00000037026	ENSACLP00000018204	ENSACLP00000037026	Protein tyrosine phosphatase receptor type C.	Uncharacterized protein.	0.464
ENSACLP00000018204	ENSACLP00000037114	ENSACLP00000018204	ENSACLP00000037114	Protein tyrosine phosphatase receptor type C.	Uncharacterized protein.	0.464
ENSACLP00000018204	ENSACLP00000037142	ENSACLP00000018204	ENSACLP00000037142	Protein tyrosine phosphatase receptor type C.	Uncharacterized protein.	0.855
ENSACLP00000018204	ENSACLP00000037295	ENSACLP00000018204	ENSACLP00000037295	Protein tyrosine phosphatase receptor type C.	Uncharacterized protein.	0.464
ENSACLP00000018204	LOC113015921	ENSACLP00000018204	ENSACLP00000036764	Protein tyrosine phosphatase receptor type C.	Selectin P.	0.464
ENSACLP00000018204	cd34	ENSACLP00000018204	ENSACLP00000001943	Protein tyrosine phosphatase receptor type C.	Si:ch211-286o17.1.	0.769
ENSACLP00000018204	cd79a	ENSACLP00000018204	ENSACLP00000039417	Protein tyrosine phosphatase receptor type C.	CD79a molecule, immunoglobulin-associated alpha.	0.756
ENSACLP00000018204	cdh5	ENSACLP00000018204	ENSACLP00000039880	Protein tyrosine phosphatase receptor type C.	Cadherin 5; Cadherins are calcium-dependent cell adhesion proteins.	0.692
ENSACLP00000030532	ENSACLP00000018204	ENSACLP00000030532	ENSACLP00000018204	Kit ligand a.	Protein tyrosine phosphatase receptor type C.	0.616
ENSACLP00000030532	LOC113013605	ENSACLP00000030532	ENSACLP00000033233	Kit ligand a.	Uncharacterized protein.	0.569
ENSACLP00000030532	cd34	ENSACLP00000030532	ENSACLP00000001943	Kit ligand a.	Si:ch211-286o17.1.	0.783
ENSACLP00000037026	ENSACLP00000018204	ENSACLP00000037026	ENSACLP00000018204	Uncharacterized protein.	Protein tyrosine phosphatase receptor type C.	0.464
ENSACLP00000037026	LOC113013605	ENSACLP00000037026	ENSACLP00000033233	Uncharacterized protein.	Uncharacterized protein.	0.842
ENSACLP00000037026	cd34	ENSACLP00000037026	ENSACLP00000001943	Uncharacterized protein.	Si:ch211-286o17.1.	0.895
ENSACLP00000037114	ENSACLP00000018204	ENSACLP00000037114	ENSACLP00000018204	Uncharacterized protein.	Protein tyrosine phosphatase receptor type C.	0.464
ENSACLP00000037114	LOC113013605	ENSACLP00000037114	ENSACLP00000033233	Uncharacterized protein.	Uncharacterized protein.	0.842
ENSACLP00000037114	cd34	ENSACLP00000037114	ENSACLP00000001943	Uncharacterized protein.	Si:ch211-286o17.1.	0.895
ENSACLP00000037142	ENSACLP00000018204	ENSACLP00000037142	ENSACLP00000018204	Uncharacterized protein.	Protein tyrosine phosphatase receptor type C.	0.855
ENSACLP00000037142	cd34	ENSACLP00000037142	ENSACLP00000001943	Uncharacterized protein.	Si:ch211-286o17.1.	0.727