STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
wdr47WD repeat domain 47a. (916 aa)    
Predicted Functional Partners:
camsap2
Calmodulin regulated spectrin-associated protein family, member 2a.
 
 
 
 0.674
LOC113011148
Calmodulin regulated spectrin-associated protein family, member 2b.
 
 
 
 0.671
LOC113024519
Uncharacterized protein.
 
 
 
 0.670
ENSACLP00000029947
CKK domain-containing protein.
   
 
 0.670
ENSACLP00000029960
Calmodulin regulated spectrin-associated protein family, member 3.
 
 
 
 0.670
fbxo33
F-box protein 33.
      
 0.537
camsap1
Calmodulin regulated spectrin-associated protein 1b.
 
  
 
 0.529
LOC113025558
Calmodulin regulated spectrin-associated protein 1a.
 
  
 
 0.529
rabggtb
Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.
      
 0.525
WDR63
WD repeat domain 63.
      
 0.514
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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