lrif1 protein (Astatotilapia calliptera) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

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experimentally determined

co-expression

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gene neighborhood

gene co-occurrence

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[Homology]

Score

lrif1

Uncharacterized protein. (796 aa)

Predicted Functional Partners:

ENSACLP00000002055

0.885

LOC113014873

0.728

ENSACLP00000001377

0.728

CBX1

0.728

cbx5

0.728

CBX1-2

0.728

ankrd40

0.720

cnot10

0.692

sdad1

0.670

srbd1

0.667

Your Current Organism:

Astatotilapia calliptera

NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy

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structured XML interaction data, according to the 'PSI-MI' data standard

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... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CBX1	lrif1	ENSACLP00000005276	ENSACLP00000001969	Uncharacterized protein.	Uncharacterized protein.	0.728
CBX1-2	lrif1	ENSACLP00000035405	ENSACLP00000001969	Chromobox homolog 1b (HP1 beta homolog Drosophila).	Uncharacterized protein.	0.728
ENSACLP00000001377	lrif1	ENSACLP00000001377	ENSACLP00000001969	Chromobox homolog 3a (HP1 gamma homolog, Drosophila).	Uncharacterized protein.	0.728
ENSACLP00000002055	lrif1	ENSACLP00000002055	ENSACLP00000001969	Structural maintenance of chromosomes flexible hinge domain containing 1.	Uncharacterized protein.	0.885
LOC113014873	lrif1	ENSACLP00000001266	ENSACLP00000001969	Chromobox homolog 3a (HP1 gamma homolog, Drosophila).	Uncharacterized protein.	0.728
ankrd40	cnot10	ENSACLP00000003655	ENSACLP00000007977	Ankyrin repeat domain 40.	CCR4-NOT transcription complex, subunit 10.	0.697
ankrd40	lrif1	ENSACLP00000003655	ENSACLP00000001969	Ankyrin repeat domain 40.	Uncharacterized protein.	0.720
cbx5	lrif1	ENSACLP00000010134	ENSACLP00000001969	Chromobox homolog 5 (HP1 alpha homolog, Drosophila).	Uncharacterized protein.	0.728
cnot10	ankrd40	ENSACLP00000007977	ENSACLP00000003655	CCR4-NOT transcription complex, subunit 10.	Ankyrin repeat domain 40.	0.697
cnot10	lrif1	ENSACLP00000007977	ENSACLP00000001969	CCR4-NOT transcription complex, subunit 10.	Uncharacterized protein.	0.692
lrif1	CBX1	ENSACLP00000001969	ENSACLP00000005276	Uncharacterized protein.	Uncharacterized protein.	0.728
lrif1	CBX1-2	ENSACLP00000001969	ENSACLP00000035405	Uncharacterized protein.	Chromobox homolog 1b (HP1 beta homolog Drosophila).	0.728
lrif1	ENSACLP00000001377	ENSACLP00000001969	ENSACLP00000001377	Uncharacterized protein.	Chromobox homolog 3a (HP1 gamma homolog, Drosophila).	0.728
lrif1	ENSACLP00000002055	ENSACLP00000001969	ENSACLP00000002055	Uncharacterized protein.	Structural maintenance of chromosomes flexible hinge domain containing 1.	0.885
lrif1	LOC113014873	ENSACLP00000001969	ENSACLP00000001266	Uncharacterized protein.	Chromobox homolog 3a (HP1 gamma homolog, Drosophila).	0.728
lrif1	ankrd40	ENSACLP00000001969	ENSACLP00000003655	Uncharacterized protein.	Ankyrin repeat domain 40.	0.720
lrif1	cbx5	ENSACLP00000001969	ENSACLP00000010134	Uncharacterized protein.	Chromobox homolog 5 (HP1 alpha homolog, Drosophila).	0.728
lrif1	cnot10	ENSACLP00000001969	ENSACLP00000007977	Uncharacterized protein.	CCR4-NOT transcription complex, subunit 10.	0.692
lrif1	sdad1	ENSACLP00000001969	ENSACLP00000004718	Uncharacterized protein.	Protein SDA1; Required for 60S pre-ribosomal subunits export to the cytoplasm; Belongs to the SDA1 family.	0.670
lrif1	srbd1	ENSACLP00000001969	ENSACLP00000035761	Uncharacterized protein.	S1 RNA binding domain 1.	0.667