STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC113033525Solute carrier family 2 member 11b; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family. (511 aa)    
Predicted Functional Partners:
LOC113030206
Malate synthase-like.
  
 0.889
LOC113031405
Cytochrome b5 reductase 4.
   
  0.824
LOC113014802
Glyceraldehyde-3-phosphate dehydrogenase.
   
 0.615
LOC113031862
Glyceraldehyde-3-phosphate dehydrogenase.
   
 0.615
gapdh
Glyceraldehyde-3-phosphate dehydrogenase.
   
 0.615
tk1
Thymidine kinase.
     
 0.602
cstf3
Cleavage stimulation factor, 3' pre-RNA, subunit 3.
  
 
 0.599
tyms
Thymidylate synthetase.
  
 
  0.587
ephx2
Epoxide hydrolase 2, cytoplasmic.
  
 
 0.573
nme9
NME/NM23 family member 8; Belongs to the NDK family.
  
 0.561
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.