Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
eftud2Elongation factor Tu GTP binding domain containing 2. (971 aa)    
Predicted Functional Partners:
snrnp200
Small nuclear ribonucleoprotein 200 (U5).
   
 0.999
snrnp40
Small nuclear ribonucleoprotein 40 (U5).
   
 0.999
prpf8
Pre-mRNA processing factor 8.
   
 0.999
prpf6
PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae).
   
 0.999
txnl4a
Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family.
    
 0.998
ENSACLP00000036553
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.997
snrpg
Small nuclear ribonucleoprotein G.
   
 0.996
prpf4
PRP4 pre-mRNA processing factor 4 homolog (yeast).
   
 0.994
prpf31
PRP31 pre-mRNA processing factor 31 homolog (yeast).
   
 0.994
ENSACLP00000033349
Splicing factor 3b, subunit 3.
   
 
 0.994
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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