Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
mcts1Malignant T-cell-amplified sequence. (183 aa)    
Predicted Functional Partners:
ENSACLP00000036584
Density-regulated protein; Belongs to the DENR family.
   
 
 0.997
LOC113020185
Eukaryotic translation initiation factor 1B.
   
 
 0.864
sbds
SBDS ribosome maturation factor.
   
 
 0.845
eif2d
Eukaryotic translation initiation factor 2D.
    
 
 0.827
gtf2e1
General transcription factor IIE, polypeptide 1, alpha.
    
   0.795
otud6b
OTU domain containing 6B.
    
 
 0.758
rps28
Ribosomal protein S28.
   
   0.757
ENSACLP00000011733
Ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family.
   
   0.737
pa2g4
Proliferation-associated 2G4, b.
   
 
 0.696
ENSACLP00000012734
40S ribosomal protein S21; Belongs to the eukaryotic ribosomal protein eS21 family.
   
   0.664
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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