STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mcts1Malignant T-cell-amplified sequence. (183 aa)    
Predicted Functional Partners:
ENSACLP00000036584
Density-regulated protein; Belongs to the DENR family.
   
 
 0.989
LOC113020185
Eukaryotic translation initiation factor 1B.
   
 
 0.959
fau
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
 
 0.930
rps28
Ribosomal protein S28.
    
   0.853
ENSACLP00000009119
40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family.
   
   0.842
ENSACLP00000020299
Ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.
    
   0.838
ENSACLP00000006383
Si:dkey-159f12.2.
   
   0.825
rps9
Ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family.
   
 
 0.822
ENSACLP00000009888
40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family.
   
   0.807
rps12
40S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family.
   
   0.795
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.