STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tyw5tRNA-yW synthesizing protein 5. (333 aa)    
Predicted Functional Partners:
lcmt2
Leucine carboxyl methyltransferase 2.
 
    
 0.758
ENSACLP00000001986
Uncharacterized protein.
    
 0.668
NPAS3
Neuronal PAS domain protein 3.
    
 0.668
LOC113036918
Hypoxia inducible factor 1 subunit alpha, like.
    
 0.668
npas1
Neuronal PAS domain protein 1.
    
 0.668
hif1a
Hypoxia inducible factor 1 subunit alpha a.
    
 0.668
epas1
Endothelial PAS domain protein 1b.
    
 0.668
trmt12
tRNA methyltransferase 12 homolog.
 
    
 0.612
rps6
40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.
    
   0.593
LOC113035844
tRNA-yW synthesizing protein 1 homolog (S. cerevisiae).
      
 0.545
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.