STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cul4bCullin 4B; Belongs to the cullin family. (891 aa)    
Predicted Functional Partners:
ddb1
Damage-specific DNA binding protein 1.
   
 0.993
ENSACLP00000018477
LisH domain-containing protein.
   
 0.976
DCAF1
DDB1 and CUL4 associated factor 1.
   
 0.976
rbx1
Ring-box 1, E3 ubiquitin protein ligase.
    
 0.974
ercc8
Excision repair cross-complementation group 8.
    
 0.964
rnf7
Ring finger protein 7.
    
 0.961
ddb2
Damage-specific DNA binding protein 2.
    
 0.961
cops5
COP9 signalosome subunit 5.
    
 0.955
cops4
COP9 constitutive photomorphogenic homolog subunit 4 (Arabidopsis).
    
 0.949
cops2
COP9 signalosome subunit 2.
  
 0.947
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
Server load: medium (46%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.