STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSACLP00000002007ARFGEF family member 3. (1684 aa)    
Predicted Functional Partners:
LOC113009519
Prohibitin.
    
 
 0.766
PHB2
Prohibitin.
    
 
 0.766
ccdc167
Coiled-coil domain containing 167.
      
 0.536
chmp7
Charged multivesicular body protein 7.
      
 0.533
drg2
Developmentally regulated GTP binding protein 2.
      
 0.520
phb
Prohibitin.
    
 
 0.510
orc5
Origin recognition complex, subunit 5.
      
 0.509
eapp
E2f-associated phosphoprotein.
      
 0.445
ENSACLP00000019736
NPHS2 stomatin family member, podocin.
    
 
 0.403
ENSACLP00000024064
PHB domain-containing protein.
    
 
 0.403
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.