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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sort1Sortilin. (832 aa)    
Predicted Functional Partners:
gak
Cyclin G associated kinase.
     
 0.982
ENSACLP00000037698
Nerve growth factor receptor a (TNFR superfamily, member 16).
    
 0.962
ENSACLP00000031169
Neurotensin.
    
 
 0.944
LOC113009079
Sortilin.
  
  
 
0.853
LOC113022678
Proteasome endopeptidase complex; Belongs to the peptidase T1A family.
  
  
 
0.849
LOC113019366
Nerve growth factor receptor b.
    
  0.837
psma4
Proteasome subunit alpha type.
    
 
 0.832
psmb1
Proteasome subunit beta.
    
   0.831
LOC113010979
Proteasome subunit beta.
    
   0.831
psma8
Proteasome subunit alpha type.
    
   0.831
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.