Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pcgf5Polycomb group ring finger 5a. (246 aa)    
Predicted Functional Partners:
auts2
Activator of transcription and developmental regulator AUTS2 a.
    
 0.999
ENSACLP00000034998
Fibrosin.
    
 0.996
RING1
Ring finger protein 1.
    
 0.979
ENSACLP00000033001
Ring finger protein 2.
    
 0.979
pcgf1
Polycomb group ring finger 1.
    
 0.978
pcgf6
Polycomb group ring finger 6.
    
 0.978
LOC113031339
Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family.
    
 0.954
LOC113014639
Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family.
    
 0.954
YAF2
YY1 associated factor 2.
    
 0.953
LOC113009167
YY1 associated factor 2.
    
 0.953
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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